| Results summary |
(from
PNAS, Mauchline et al.,2006) |
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| SBP |
Fusion |
Pop Mean |
Induction (fold) |
Inducer |
ABC class |
Characterised RhizobiumSystem |
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| Sugars (33) |
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| Pentose
monosaccharides (8) |
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| SMc02324 |
SMc02323p |
14544 |
>6.2, >6.2 |
rhamnose, erythritol |
CUT2 |
rha R.leg |
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SMc02325i |
705 |
8.5 |
rhamnose |
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| SMc02774 |
SMc02773i |
508 |
6.7, 4.9, 4.2 |
D-(+)-fucose, pyruvic acid, L-(-)-fucose |
CUT2 |
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| SMb21103 |
SMb21103p |
1193 |
6, 4.3 |
D-(+)-fucose, L-(-)-fucose |
CUT1 |
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SMb21102-3p |
591 |
8.4 |
L-(-)-fucose |
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SMb21103i |
420 |
14, 5.8 |
D-(+)-fucose, L-(-)-fucose |
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| SMb21587 |
SMb21587p |
892 |
40, 33 |
D-(+)-fucose,
L-(+)-arabinose |
CUT2 |
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SMb21587i |
650 |
11, 9.8 |
talose, L-(+)-arabinose |
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| SMb20442 |
SMb20444i |
538 |
4.1, 4, 2.5 |
D-(+)-fucose, mannose, L-(-)-fucose |
TRAP-T |
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SMb20441-2p |
5513 |
3.2 |
mannose |
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| SMa0252 |
SMa0247p% |
2437 |
5, 3.3, 3 |
L-(+)-arabinose, lactose, raffinose |
TRAP-T |
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| SMb20856 |
SMb20854i |
406 |
6.8 |
deoxyribose |
CUT2 |
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| SMa0067 |
SMa0067p |
1582 |
4.3, 4.2 |
ribose, mannose |
CUT2 |
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| Hexose
monosaccharides (6) |
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| SMa0203 |
SMa0203p |
3750 |
19, 4.6, 4.6, 4 |
galactose,
L-(+)-arabinose, glucose, D-(-)-arabinose |
CUT2 |
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SMa0198i |
612 |
8.2, 6.6, 4.8, 3.5 |
D-(+)-fucose, L-(+)-arabinose,
galactose, L-(-)-fucose, |
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| SMb21345 |
SMb21343i |
401 |
5.6 |
galactose |
CUT2 |
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| SMa2305 |
SMa2305p |
1959 |
5.4 |
tagatose |
CUT1 |
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| SMb21421 |
SMb21684p% |
2525 |
3.4 |
tagatose |
CUT2 |
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| SMb20410 |
SMb20410p |
3167 |
3.2, 3.1 |
mannose, dulcitol |
QAT |
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orphan SBP |
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| SMb20902 |
SMb20904i |
1182 |
8.1, 7, 6.7, 3.2 |
mannose, L-(+)-lyxose, glucose,
sorbose |
CUT2 |
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| Oligosaccharide:
alpha glucosides (3) |
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| SMb20325 |
SMb20328i |
1022 |
7 |
trehalose |
CUT1 |
thu S.mel |
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SMb20324-5p |
898 |
6.3 |
trehalose |
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| SMc03061 |
SMc03061i |
1153 |
3.8, 2.8, 2.8, 2.4 |
maltotriose, turanose, sucrose, maltose |
CUT1 |
agl S.mel |
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| SMc04396 |
SMc04393i |
717 |
9.2 |
dextrin |
CUT1 |
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| Oligosaccharide:
beta glucosides (1) |
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| SMc04259 |
SMc04259i |
2076 |
19, 5.9, 5.5 |
gentiobiose, salicin, cellobiose |
CUT1 |
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SMc04259-60p |
2599 |
9.3 |
gentiobiose |
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| Oligosaccharide:
alpha galactosides (1) |
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| SMb21647 |
SMb21648p% |
788 |
67, 25, 18 |
melibiose, raffinose, galactose |
PepT |
agp S.mel |
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SMb21644i |
1899 |
20, 11, 9.2, 7.7, 7.4 |
raffinose,
galactosamine, dulcitol, galactose, stachyose |
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| Oligosaccharide:
galactosides (1) |
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| SMb20931 |
SMb20931p |
6583 |
3.3, 3.1, 2.4 |
raffinose, melibiose, lactose
(galactose 1.4x) |
CUT2 |
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SMb20931i |
1286 |
4.9, 3.1, 2.7, 2.5, 2.1 |
lactose, lactulose,
melibiose, raffinose, galactose |
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| Oligosaccharide:
beta galactosides (1) |
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| SMb21652 |
SMb20002i |
825 |
15, 7.6 |
lactose, lactulose |
CUT1 |
lacE A.radiob |
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| Polyols (6) |
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| SMb20316 |
SMb20315i |
498 |
3.3 |
erythritol |
CUT2 |
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| SMb20072 |
SMb20072p |
1713 |
10 |
myo-inositol |
CUT2 |
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orphan SBP |
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| SMb20712 |
SMb20712p |
11507 |
6.4 |
myo-inositol |
CUT2 |
moc S.mel |
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| SMc01628 |
SMc01624i |
962 |
15, 12, 6.2, 5.7 |
xylitol,
adonitol, sorbitol, erythritol |
CUT1 |
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| SMb21377 |
SMb21376i |
708 |
18, 10, 9.9, 6.8, 5.1 |
dulcitol,
tagatose, galactose, sorbose, L-(+)-lyxose |
CUT2 |
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SMb21377p |
10173 |
4.7 |
dulcitol |
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| SMc01496 |
SMc01496i |
1368 |
14, 10, 7.3, 6.7 |
dulcitol, sorbitol, mannitol,
maltitol |
CUT1 |
smo R.spher |
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| Sugar
amines (3) |
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| SMb21135 |
SMb21138i |
882 |
19, 17 |
galactosamine, glucosamine |
PAAT |
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| SMb21221 |
SMb21216i |
691 |
15, 2.5 |
glucosamine, galactosamine |
CUT1 |
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| SMb21151 |
SMb21151i |
1067 |
2.9 |
galactosamine |
CUT1 |
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| Sugar
phosphates (3) |
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| SMa1427 |
SMa1427p |
3361 |
3.9, 3 |
glucose 6P, glycerol 3P |
CUT2 |
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| SMb21273 |
SMb21272p |
1500 |
3.5, 2.8 |
glucose 6P, glycerol 3P |
POPT |
pot A.tumef |
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| SMc02514 |
SMc02520p% |
18979 |
3, 2.3 |
glycerol-3-phosphate, glycerol |
CUT1 |
gene is glpD(glycerol3P dehydrogenase) |
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SMc02519i |
474 (glucose) |
5.1, 3.9 |
glycerol-3-phosphate, glycerol |
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| Amino acids and derivatives (18) |
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| SMb21526 |
SMb21526p |
869 |
>100 |
taurine |
TauT |
tau E.coli |
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SMb21528i |
631 |
29 |
taurine |
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| SMb20428 |
SMb20427p |
50819 |
>3* |
ectoine |
PAAT |
ehu S.mel |
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| SMc00672 |
SMc00673p% |
5572 |
4.1 |
histidine |
QAT |
hut S.mel |
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SMc00672i |
475 (glycerol) |
3.4 |
histidine |
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SMc00673-4p |
399 |
18 |
histidine |
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| SMb21097 |
SMb21097i |
1066 |
13 |
citrulline |
PAAT |
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| SMa0104 |
SMa0101p% |
1253 |
7.9, 5.7, 4.1 |
lysine, ectoine, asparagine |
PepT |
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SMa0101i |
1894 |
5.6 |
lysine |
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| SMb21196 |
SMb21196p |
4117 |
3 |
methionine |
PepT |
opp B.subtilis |
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SMb21196i |
1141 |
5.3 |
methionine |
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| SMc00078 |
SMc00078p |
5814 |
4.6 |
methionine |
HAAT |
braC3 R.leg |
orphan SBP |
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| SMc03121 |
SMc03121p |
5155 |
5.1, 4.9 |
methionine, hydroxybutyrate |
HAAT |
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| SMc03124 |
SMc03124p |
11415 |
3 |
arginine |
PepT |
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| SMc03131 |
SMc03131p |
5943 |
4 |
DL-2-aminoadipic acid |
PAAT |
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| SMb20320 |
SMb20321i |
664 |
7.1 |
hydroxyproline |
TRAP-T |
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| SMc02219 |
SMc02219p |
1162 |
3.1, 2.6, 2.6, 2.6, 2.1 |
valine,
homoserine, isoleucine, hydroxyproline,
leucine |
PAAT |
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orphan SBP |
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| SMc02832 |
SMc02832p |
3950 |
2.8, 2.8, 2.4, 1.6 |
taurine, valine, isoleucine,
leucine |
PepT |
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| SMc00786 |
SMc00786p |
2905 |
2.7, 2.4 |
CAS, hydroxyproline |
PepT |
dpp R.leg |
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| SMc04135 |
SMc04135p |
17291 |
2.1 |
CAS |
CUT1 |
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| SMa1337 |
SMa1337p |
8881 |
2.4 |
CAS |
CUT1 |
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| SMa1651 |
SMa1651p |
6079 |
3 |
CAS |
PepT |
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| SMc04037 |
SMc04032-3p |
1585 |
4.1 |
CAS |
PepT |
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| Alkaloids,
purine and pyrimidine derivatives (4) |
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| SMa2129 |
SMa2129p |
1208 |
66, 50, 30 |
caffeine, theobromine, theophylline |
CUT2 |
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SMa2125i |
475 |
16, 8.2 |
caffeine,
theobromine |
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| SMb20127 |
SMb20124i |
289 |
3.3, 2.8 |
xanthine, xanthosine |
CUT2 |
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| SMc02415 |
SMc02415p |
3891 |
7 |
allantoin |
PepT |
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| SMc01827 |
SMc01823i |
660 |
6.7, 3.2 |
uracil, uridine |
NitT |
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| Quaternary
amines and putrescine (4) |
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| SMc02737 |
SMc02737i |
320 |
2.2 |
choline |
QAT |
cho S.mel |
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| SMb20570 |
SMb20571i |
804 |
4.6, 2.4 |
glycine
betaine, choline |
NitT |
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| SMc02344 |
SMc02344i |
1643 |
7.2, 3 |
glycine betaine, choline |
NitT |
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| SMc01652 |
SMc01654i |
634 |
5.9, 2.8 |
putrescine, agmatine |
POPT |
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| Organic
acids (8) |
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| SMa0157 |
SMa0157p |
12981 |
3.4 |
malonic
acid |
TRAP-T |
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SMa0151i |
391 |
3.7 |
malonic
acid |
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| SMb20036 |
SMb20036i |
671 |
8.7 |
quinic acid |
TRAP-T |
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| SMb21438 |
SMb21439p |
501 |
13, 12 |
oxobutyric acid, 3-methyl oxovaleric acid |
TRAP-T |
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| SMc00265 |
SMc00266p |
8113 |
4.6, 2.9 |
oxobutyric acid, 3-methyl oxovaleric acid |
TRAP-T |
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| SMb21353 |
SMb21353i |
507 |
11, 3.3 |
pyruvic acid, methyl-pyruvic acid |
TRAP-T |
dctP R.capsulatus NOT
CLOSE |
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| SMb20568 |
SMb20784i |
601 |
7, 3.4, 2.1 |
protochatechuic acid, p-hydroxybenzoic acid, quinic acid |
HAAT |
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| SMb20144 |
SMb20144p |
8888 |
10 |
glycolic
acid |
PepT |
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| SMc02021 |
SMc02021p |
852 |
5.3, 4.4 |
butyric
acid, valeric acid |
CUT2 |
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| Limitation
(10) |
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| SMc02509 |
SMc02509p |
391 |
110, 110 |
manganese limitation, iron limitation |
MZT |
sit S.mel |
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| SMc03869 |
SMc03869p |
580 |
11 |
thiamine
limitation |
ThiT |
thi S.typhimurium 57% |
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| SMc03196 |
SMc03196p |
685 |
12 |
molybdate
limitation |
MolT |
mod B. japonicum 58% |
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| SMc04245 |
SMc04245p |
2409 |
37 |
zinc
limitation |
MZT |
znu E.coli 33% |
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| SMa1746 |
SMa1746p |
1330 |
3.8 |
iron
limitation |
FeCT |
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| SMb21133 |
SMb21133p |
8491 |
4.6 |
sulphate
limitation |
SulT |
cys E.coli 59% |
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| SMa0585 |
SMa0585p |
614 |
16 |
nitrogen
limitation |
NitT |
TAT |
|
|
| |
SMa0583i |
1131 |
6.6 |
nitrogen
limitation |
|
|
|
|
| SMb20605 |
SMb20605p |
2322 |
15 |
nitrogen
limitation |
HAAT |
|
|
|
| |
SMb20604i |
3567 |
5.6 |
nitrogen
limitation |
|
|
|
|
| SMb21114 |
SMb21115p |
176 |
20 |
nitrogen
limitation |
NitT |
|
|
|
| SMb21176 |
SMb21177p |
17647 |
2.9 |
phosphate limitation |
PhnT |
pho S.mel |
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| p
- plasmid system |
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| i
- integrated fusion system |
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| % - promoter is in front of a gene not
encoding an ABC transporter component |
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|
| * required dilution to
find induction level |
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| T-test
at 95% significance or greater |
|
| Induction
values shown to 2 sig.fig. |
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